zhihan1996/DNABERT-2-117M

Model not loading properly

#39 opened 10 months ago by

lordim

How to Improve Accuracy and Balance Recall and Specificity for DNABERT-2-117M Binary Classification?

#38 opened 11 months ago by

qiuchenwang

经过处理后的seqlen长度不统一如何处理

#37 opened 11 months ago by

shengFWE

TypeError: dot() got an unexpected keyword argument 'trans_b'

3

#36 opened 12 months ago by

oagbohouto

Where to find Pretraining Code?

#35 opened about 1 year ago by

Fitz3

add autoconfig

#34 opened about 1 year ago by

Sifal

CUDA: OutOfMemoryError

#33 opened about 1 year ago by

8497prashant

Make compatible with recent versions of triton

#32 opened over 1 year ago by

tanhevg

Adding `safetensors` variant of this model

#31 opened over 1 year ago by

Example Notebook

#29 opened over 1 year ago by

GCabas

Encoding for long contexts

#28 opened over 1 year ago by

yoavkt

Fix AutoModel not loading model correctly due to config_class inconsistency

👀 👍 3

12

#26 opened almost 2 years ago by

liamclarkza

Update bert_layers.py

#25 opened almost 2 years ago by

ruffy369

A modified DNABERT2 that returns the attention too

👍 6

#24 opened almost 2 years ago by

jaandoui

Triton version

9

#23 opened almost 2 years ago by

JiayiJennie

how do I output the attention scores from the last layer of the encoder?

#22 opened almost 2 years ago by

jkb0722

Tokenization of more than 2 sequences

#21 opened almost 2 years ago by

jaandoui

Impact of Padding on DNABERT Model Performance

#20 opened almost 2 years ago by

poilkjhytg

Setting DNABERT-2 revision

#19 opened almost 2 years ago by

SeanDoyle

TypeError: forward() got an unexpected keyword argument 'attention_mask'

#18 opened almost 2 years ago by

jkb0722

Adding `safetensors` variant of this model

#17 opened almost 2 years ago by

Assertion Error / Implementation Error

🔥 1

#16 opened almost 2 years ago by

8497prashant

Extract attention from model

#15 opened about 2 years ago by

kaustabanv

error on inference using DNABERT2 - can you please share the environment you used for running it?

#12 opened about 2 years ago by

NettaB

Adding `safetensors` variant of this model

#11 opened over 2 years ago by

Is the datasets for foundational model pre-training publicly accessible?

#10 opened over 2 years ago by

JayceCeleste

Expecting bi-modal disstribution of probabilities

#9 opened over 2 years ago by

christianclough

Inference fails with output_all_encoded_layers=True.

#8 opened over 2 years ago by

pg20sanger

Adding `safetensors` variant of this model

#7 opened over 2 years ago by

The model class you are passing has a `config_class` attribute that is not consistent with the config class you passed

5

#6 opened over 2 years ago by

saikiran7

About the output of tokenizer and the model

#4 opened over 2 years ago by

RandyWang504

Despite multiple trials and examining the model configuration, it seems that the model hosted on Hugging Face (`huggingface.co`) cannot handle sequences that exceed a length of 512 tokens.