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Datasets:
jang1563
/
genelab-benchmark

Tasks:
Tabular Classification
Languages:
English
Size:
1K<n<10K
Tags:
genomics
transcriptomics
spaceflight
space-biology
benchmarking
nasa-osdr
License:
Dataset card Files
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 Community
jang1563 commited on
Commit
f37b508
·
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1 Parent(s): b90055b

Upload A6_eye_lomo self-contained fold package

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Files changed (21) hide show
  1. A6_eye_lomo/fold_OSD-397_test/fold_info.json +21 -0
  2. A6_eye_lomo/fold_OSD-397_test/selected_genes.txt +0 -0
  3. A6_eye_lomo/fold_OSD-397_test/test_X.csv +0 -0
  4. A6_eye_lomo/fold_OSD-397_test/test_meta.csv +17 -0
  5. A6_eye_lomo/fold_OSD-397_test/test_y.csv +17 -0
  6. A6_eye_lomo/fold_OSD-397_test/train_X.csv +0 -0
  7. A6_eye_lomo/fold_OSD-397_test/train_meta.csv +22 -0
  8. A6_eye_lomo/fold_OSD-397_test/train_y.csv +22 -0
  9. A6_eye_lomo/fold_RR-1_test/fold_info.json +21 -0
  10. A6_eye_lomo/fold_RR-1_test/selected_genes.txt +0 -0
  11. A6_eye_lomo/fold_RR-1_test/test_meta.csv +13 -0
  12. A6_eye_lomo/fold_RR-1_test/test_y.csv +13 -0
  13. A6_eye_lomo/fold_RR-1_test/train_meta.csv +26 -0
  14. A6_eye_lomo/fold_RR-1_test/train_y.csv +26 -0
  15. A6_eye_lomo/fold_RR-3_test/fold_info.json +21 -0
  16. A6_eye_lomo/fold_RR-3_test/selected_genes.txt +0 -0
  17. A6_eye_lomo/fold_RR-3_test/test_meta.csv +10 -0
  18. A6_eye_lomo/fold_RR-3_test/test_y.csv +10 -0
  19. A6_eye_lomo/fold_RR-3_test/train_meta.csv +29 -0
  20. A6_eye_lomo/fold_RR-3_test/train_y.csv +29 -0
  21. A6_eye_lomo/task_info.json +75 -0
A6_eye_lomo/fold_OSD-397_test/fold_info.json ADDED
@@ -0,0 +1,21 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "test_mission": "OSD-397",
3
+ "train_missions": [
4
+ "RR-1",
5
+ "RR-3"
6
+ ],
7
+ "n_train": 21,
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+ "n_test": 16,
9
+ "n_genes_before_var_filter": 27059,
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+ "n_genes_after_var_filter": 20294,
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+ "var_percentile_cutoff": 0.25,
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+ "train_label_distribution": {
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+ "Flight": 11,
14
+ "Ground": 10
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+ },
16
+ "test_label_distribution": {
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+ "Flight": 9,
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+ "Ground": 7
19
+ },
20
+ "excluded_bc_ag_samples": 4
21
+ }
A6_eye_lomo/fold_OSD-397_test/selected_genes.txt ADDED
The diff for this file is too large to render. See raw diff
 
A6_eye_lomo/fold_OSD-397_test/test_X.csv ADDED
The diff for this file is too large to render. See raw diff
 
A6_eye_lomo/fold_OSD-397_test/test_meta.csv ADDED
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+ ,library_size,n_detected_genes,pct_top100_genes,remove_low_library,remove_low_genes,remove_pca_outlier,remove_duplicate,REMOVE,label,mission,osd_id,strain,track,duration_days,tissue
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+ M21,22346175.45624828,23333,31.38372184922241,False,False,False,False,False,Flight,OSD-397,OSD-397,Mus musculus,2a,,eye
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A6_eye_lomo/fold_OSD-397_test/test_y.csv ADDED
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A6_eye_lomo/fold_OSD-397_test/train_X.csv ADDED
The diff for this file is too large to render. See raw diff
 
A6_eye_lomo/fold_OSD-397_test/train_meta.csv ADDED
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+ ,library_size,n_detected_genes,pct_top100_genes,remove_low_library,remove_low_genes,remove_pca_outlier,remove_duplicate,REMOVE,label,mission,osd_id,strain,track,duration_days,tissue
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+ Mmus_BAL-TAL_RRTN_GC_Rep4_G10,59076238.08849752,24994,30.48267878109005,False,False,False,False,False,GC,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
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+ Mmus_BAL-TAL_LRTN_FLT_Rep2_F7,62113564.94233623,25005,31.863460171481577,False,False,False,False,False,Flight,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
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+ Mmus_BAL-TAL_LRTN_FLT_Rep3_F8,60972240.38585846,24779,30.94246016346029,False,False,False,False,False,Flight,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
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+ Mmus_BAL-TAL_LRTN_FLT_Rep4_F9,58899368.167120405,24908,29.213343551522865,False,False,False,False,False,Flight,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
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+ Mmus_BAL-TAL_LRTN_FLT_Rep5_F10,56841228.89544713,24957,27.366709140717127,False,False,False,False,False,Flight,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
A6_eye_lomo/fold_OSD-397_test/train_y.csv ADDED
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+ ,0
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+ Mmus_C57-6J_EYE_FLT_Rep6_M28,1.0
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+ Mmus_BAL-TAL_LRTN_GC_Rep1_G6,0.0
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+ Mmus_BAL-TAL_RRTN_GC_Rep4_G10,0.0
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+ Mmus_BAL-TAL_LRTN_FLT_Rep2_F7,1.0
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+ Mmus_BAL-TAL_LRTN_FLT_Rep3_F8,1.0
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+ Mmus_BAL-TAL_LRTN_FLT_Rep4_F9,1.0
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+ Mmus_BAL-TAL_LRTN_FLT_Rep5_F10,1.0
A6_eye_lomo/fold_RR-1_test/fold_info.json ADDED
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+ {
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+ "test_mission": "RR-1",
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+ "train_missions": [
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+ "RR-3",
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+ "OSD-397"
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+ ],
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+ "n_train": 25,
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+ "n_test": 12,
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+ "n_genes_before_var_filter": 27059,
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+ "n_genes_after_var_filter": 20294,
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+ "var_percentile_cutoff": 0.25,
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+ "train_label_distribution": {
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+ "Flight": 14,
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+ "Ground": 11
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+ },
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+ "test_label_distribution": {
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+ "Flight": 6,
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+ "Ground": 6
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+ },
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+ "excluded_bc_ag_samples": 4
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+ }
A6_eye_lomo/fold_RR-1_test/selected_genes.txt ADDED
The diff for this file is too large to render. See raw diff
 
A6_eye_lomo/fold_RR-1_test/test_meta.csv ADDED
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+ ,library_size,n_detected_genes,pct_top100_genes,remove_low_library,remove_low_genes,remove_pca_outlier,remove_duplicate,REMOVE,label,mission,osd_id,strain,track,duration_days,tissue
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A6_eye_lomo/fold_RR-1_test/test_y.csv ADDED
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A6_eye_lomo/fold_RR-1_test/train_meta.csv ADDED
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+ Mmus_BAL-TAL_LRTN_FLT_Rep4_F9,58899368.167120405,24908,29.213343551522865,False,False,False,False,False,Flight,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
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+ Mmus_BAL-TAL_LRTN_FLT_Rep5_F10,56841228.89544713,24957,27.366709140717127,False,False,False,False,False,Flight,RR-3,OSD-194,C57BL/6J,2a,40.0,eye
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+ M22,23953189.854642157,23616,35.44198866240122,False,False,False,False,False,Flight,OSD-397,OSD-397,Mus musculus,2a,,eye
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The diff for this file is too large to render. See raw diff
 
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A6_eye_lomo/task_info.json ADDED
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