Instructions to use ctheodoris/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use ctheodoris/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="ctheodoris/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("ctheodoris/Geneformer") model = AutoModelForMaskedLM.from_pretrained("ctheodoris/Geneformer", device_map="auto") - Inference
- Notebooks
- Google Colab
- Kaggle
File size: 482 Bytes
76a78a0 d319fef 76a78a0 | 1 2 3 4 5 6 7 8 9 | include geneformer/gene_median_dictionary_gc104M.pkl
include geneformer/gene_name_id_dict_gc104M.pkl
include geneformer/ensembl_mapping_dict_gc104M.pkl
include geneformer/token_dictionary_gc104M.pkl
include geneformer/gene_dictionaries_30m/gene_median_dictionary_gc30M.pkl
include geneformer/gene_dictionaries_30m/gene_name_id_dict_gc30M.pkl
include geneformer/gene_dictionaries_30m/ensembl_mapping_dict_gc30M.pkl
include geneformer/gene_dictionaries_30m/token_dictionary_gc30M.pkl |