<commit_before># -*- coding: utf-8 -*-
#
# GPy documentation build configuration file, created by
# sphinx-quickstart on Fri Jan 18 15:30:28 2013.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

#autodoc_default_flags = ['members', 'show-inheritance', 'private-members', 'special-members']
#autodoc_default_flags = ['private-members', 'special-members']
#autodoc_default_flags = 'private-members'
#autodoc_member_order = "source"

#def autodoc_skip_member(app, what, name, obj, skip, options):
    #exclusions = ('__weakref__',  # special-members
                  #'__doc__', '__module__', '__dict__',  # undoc-members
                  #)
    #exclude = name in exclusions

    #inclusions = ('_src')
    #include = name in inclusions
    #if include:
        #print app, what, name, obj, skip, options
        #return False
    #return skip or exclude

#def setup(app):
    ##app.connect('autodoc-process-docstring', cut_lines(2))
    ##app.connect('autodoc_default_flags', autodoc_default_flags)
    ##app.connect('autodoc_member_order', autodoc_member_order)
    #app.connect('autodoc-skip-member', autodoc_skip_member)

import sys
import os

print "python exec:", sys.executable
print "sys.path:", sys.path
try:
    import numpy
    print "numpy: %s, %s" % (numpy.__version__, numpy.__file__)
except ImportError:
    print "no numpy"
try:
    import matplotlib
    print "matplotlib: %s, %s" % (matplotlib.__version__, matplotlib.__file__)
except ImportError:
    print "no matplotlib"
try:
    import ipython
    print "ipython: %s, %s" % (ipython.__version__, ipython.__file__)
except ImportError:
    print "no ipython"
try:
    import sphinx
    print "sphinx: %s, %s" % (sphinx.__version__, sphinx.__file__)
except ImportError:
    print "no sphinx"

print "sys.path:", sys.path

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('../GPy'))

#print "sys.path.after:", sys.path

# If your extensions are in another directory, add it here. If the directory
# is relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
sys.path.append(os.path.abspath('sphinxext'))

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('./sphinxext'))

# -- General configuration -----------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
print "Importing extensions"

extensions = ['sphinx.ext.autodoc',
              #'sphinx.ext.doctest'
              'sphinx.ext.viewcode',
              #'sphinx.ext.pngmath',
              'sphinx.ext.mathjax',
              # 'ipython_directive',
              # 'ipython_console_highlighting'
              #'matplotlib.sphinxext.plot_directive'
             ]
plot_formats = [('png', 80), ('pdf', 50)]

#pngmath_latex_preamble=r'\usepackage[active]{preview}\usepackage{MnSymbol}' # + other custom stuff for inline math, such as non-default math fonts etc.
#pngmath_use_preview=True

print "finished importing"

##############################################################################
##
## Mock out imports with C dependencies because ReadTheDocs can't build them.
#############################################################################

class Mock(object):
    __all__ = []
    def __init__(self, *args, **kwargs):
        pass

    def __call__(self, *args, **kwargs):
        return Mock()

    @classmethod
    def __getattr__(cls, name):
        if name in ('__file__', '__path__'):
            return '/dev/null'
        elif name[0] == name[0].upper():
            mockType = type(name, (), {})
            mockType.__module__ = __name__
            return mockType
        else:
            return Mock()

#import mock

print "Mocking"
MOCK_MODULES = ['sympy', 'scipy', 'scipy.linalg', 'scipy.linalg.lapack', 'scipy.special', 'scipy.io', 'scipy.integrate', 'scipy.linalg', 'scipy.linalg.cython_blas', 'scipy.optimize',
    'sympy.utilities', 'sympy.utilities.codegen', 'sympy.core.cache',
    'sympy.core', 'sympy.parsing', 'sympy.parsing.sympy_parser', 'Tango', 'numdifftools'
    ]
for mod_name in MOCK_MODULES:
    sys.modules[mod_name] = Mock()

# ----------------------- READTHEDOCS ------------------
on_rtd = os.environ.get('READTHEDOCS', None) == 'True'

#on_rtd = True
if on_rtd:
    sys.path.append(os.path.abspath('../GPy'))

    import subprocess

    proc = subprocess.Popen("pwd", stdout=subprocess.PIPE, shell=True)
    (out, err) = proc.communicate()
    print "program output:", out
    proc = subprocess.Popen("ls ../", stdout=subprocess.PIPE, shell=True)
    (out, err) = proc.communicate()
    print "program output:", out
    #Lets regenerate our rst files from the source, -P adds private modules (i.e kern._src)
    proc = subprocess.Popen("sphinx-apidoc -P -f -o . ../GPy", stdout=subprocess.PIPE, shell=True)
    (out, err) = proc.communicate()
    print "program output:", out
    #proc = subprocess.Popen("whereis numpy", stdout=subprocess.PIPE, shell=True)
    #(out, err) = proc.communicate()
    #print "program output:", out
    #proc = subprocess.Popen("whereis matplotlib", stdout=subprocess.PIPE, shell=True)
    #(out, err) = proc.communicate()
    #print "program output:", out

print "Compiled files"

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'GPy'
copyright = u'2013, Author'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = ''
# The full version, including alpha/beta/rc tags.
release = ''

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'default'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'alabaster'

# This is to revert to the default theme on readthedocs
html_style = '/alabaster.css'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'GPydoc'

# -- Options for LaTeX output --------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    'preamble': '\\usepackage{MnSymbol,amsmath}',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
    ('index', 'GPy.tex', u'GPy Documentation',
    u'Author', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'gpy', u'GPy Documentation',
     [u'Author'], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False

# -- Options for Texinfo output ------------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    ('index', 'GPy', u'GPy Documentation',
    u'Author', 'GPy', 'One line description of project.',
    'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# -- Options for Epub output ---------------------------------------------------

# Bibliographic Dublin Core info.
epub_title = u'GPy'
epub_author = u'Author'
epub_publisher = u'Author'
epub_copyright = u'2013, Author'

# The language of the text. It defaults to the language option
# or en if the language is not set.
#epub_language = ''

# The scheme of the identifier. Typical schemes are ISBN or URL.
#epub_scheme = ''

# The unique identifier of the text. This can be a ISBN number
# or the project homepage.
#epub_identifier = ''

# A unique identification for the text.
#epub_uid = ''

# A tuple containing the cover image and cover page html template filenames.
#epub_cover = ()

# HTML files that should be inserted before the pages created by sphinx.
# The format is a list of tuples containing the path and title.
#epub_pre_files = []

# HTML files shat should be inserted after the pages created by sphinx.
# The format is a list of tuples containing the path and title.
#epub_post_files = []

# A list of files that should not be packed into the epub file.
#epub_exclude_files = []

# The depth of the table of contents in toc.ncx.
#epub_tocdepth = 3

# Allow duplicate toc entries.
#epub_tocdup = True
<commit_msg>[scipy] deleted from mocking<commit_after># -*- coding: utf-8 -*-
#
# GPy documentation build configuration file, created by
# sphinx-quickstart on Fri Jan 18 15:30:28 2013.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

#autodoc_default_flags = ['members', 'show-inheritance', 'private-members', 'special-members']
#autodoc_default_flags = ['private-members', 'special-members']
#autodoc_default_flags = 'private-members'
#autodoc_member_order = "source"

#def autodoc_skip_member(app, what, name, obj, skip, options):
    #exclusions = ('__weakref__',  # special-members
                  #'__doc__', '__module__', '__dict__',  # undoc-members
                  #)
    #exclude = name in exclusions

    #inclusions = ('_src')
    #include = name in inclusions
    #if include:
        #print app, what, name, obj, skip, options
        #return False
    #return skip or exclude

#def setup(app):
    ##app.connect('autodoc-process-docstring', cut_lines(2))
    ##app.connect('autodoc_default_flags', autodoc_default_flags)
    ##app.connect('autodoc_member_order', autodoc_member_order)
    #app.connect('autodoc-skip-member', autodoc_skip_member)

import sys
import os

print "python exec:", sys.executable
print "sys.path:", sys.path
try:
    import numpy
    print "numpy: %s, %s" % (numpy.__version__, numpy.__file__)
except ImportError:
    print "no numpy"
try:
    import matplotlib
    print "matplotlib: %s, %s" % (matplotlib.__version__, matplotlib.__file__)
except ImportError:
    print "no matplotlib"
try:
    import ipython
    print "ipython: %s, %s" % (ipython.__version__, ipython.__file__)
except ImportError:
    print "no ipython"
try:
    import sphinx
    print "sphinx: %s, %s" % (sphinx.__version__, sphinx.__file__)
except ImportError:
    print "no sphinx"

print "sys.path:", sys.path

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('../GPy'))

#print "sys.path.after:", sys.path

# If your extensions are in another directory, add it here. If the directory
# is relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
sys.path.append(os.path.abspath('sphinxext'))

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('./sphinxext'))

# -- General configuration -----------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
print "Importing extensions"

extensions = ['sphinx.ext.autodoc',
              #'sphinx.ext.doctest'
              'sphinx.ext.viewcode',
              #'sphinx.ext.pngmath',
              'sphinx.ext.mathjax',
              # 'ipython_directive',
              # 'ipython_console_highlighting'
              #'matplotlib.sphinxext.plot_directive'
             ]
plot_formats = [('png', 80), ('pdf', 50)]

#pngmath_latex_preamble=r'\usepackage[active]{preview}\usepackage{MnSymbol}' # + other custom stuff for inline math, such as non-default math fonts etc.
#pngmath_use_preview=True

print "finished importing"

##############################################################################
##
## Mock out imports with C dependencies because ReadTheDocs can't build them.
#############################################################################

class Mock(object):
    __all__ = []
    def __init__(self, *args, **kwargs):
        pass

    def __call__(self, *args, **kwargs):
        return Mock()

    @classmethod
    def __getattr__(cls, name):
        if name in ('__file__', '__path__'):
            return '/dev/null'
        elif name[0] == name[0].upper():
            mockType = type(name, (), {})
            mockType.__module__ = __name__
            return mockType
        else:
            return Mock()

#import mock

print "Mocking"
MOCK_MODULES = ['scipy.linalg', 'scipy.linalg.lapack', 'scipy.special', 'scipy.io', 'scipy.integrate', 'scipy.linalg', 'scipy.linalg.cython_blas', 'scipy.optimize',
    'sympy.utilities', 'sympy.utilities.codegen', 'sympy.core.cache',
    'sympy.core', 'sympy.parsing', 'sympy.parsing.sympy_parser', 'Tango', 'numdifftools'
    ]
for mod_name in MOCK_MODULES:
    sys.modules[mod_name] = Mock()

# ----------------------- READTHEDOCS ------------------
on_rtd = os.environ.get('READTHEDOCS', None) == 'True'

#on_rtd = True
if on_rtd:
    sys.path.append(os.path.abspath('../GPy'))

    import subprocess

    proc = subprocess.Popen("pwd", stdout=subprocess.PIPE, shell=True)
    (out, err) = proc.communicate()
    print "program output:", out
    proc = subprocess.Popen("ls ../", stdout=subprocess.PIPE, shell=True)
    (out, err) = proc.communicate()
    print "program output:", out
    #Lets regenerate our rst files from the source, -P adds private modules (i.e kern._src)
    proc = subprocess.Popen("sphinx-apidoc -P -f -o . ../GPy", stdout=subprocess.PIPE, shell=True)
    (out, err) = proc.communicate()
    print "program output:", out
    #proc = subprocess.Popen("whereis numpy", stdout=subprocess.PIPE, shell=True)
    #(out, err) = proc.communicate()
    #print "program output:", out
    #proc = subprocess.Popen("whereis matplotlib", stdout=subprocess.PIPE, shell=True)
    #(out, err) = proc.communicate()
    #print "program output:", out

print "Compiled files"

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'GPy'
copyright = u'2013, Author'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = ''
# The full version, including alpha/beta/rc tags.
release = ''

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'default'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'alabaster'

# This is to revert to the default theme on readthedocs
html_style = '/alabaster.css'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'GPydoc'

# -- Options for LaTeX output --------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    'preamble': '\\usepackage{MnSymbol,amsmath}',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
    ('index', 'GPy.tex', u'GPy Documentation',
    u'Author', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'gpy', u'GPy Documentation',
     [u'Author'], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False

# -- Options for Texinfo output ------------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    ('index', 'GPy', u'GPy Documentation',
    u'Author', 'GPy', 'One line description of project.',
    'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# -- Options for Epub output ---------------------------------------------------

# Bibliographic Dublin Core info.
epub_title = u'GPy'
epub_author = u'Author'
epub_publisher = u'Author'
epub_copyright = u'2013, Author'

# The language of the text. It defaults to the language option
# or en if the language is not set.
#epub_language = ''

# The scheme of the identifier. Typical schemes are ISBN or URL.
#epub_scheme = ''

# The unique identifier of the text. This can be a ISBN number
# or the project homepage.
#epub_identifier = ''

# A unique identification for the text.
#epub_uid = ''

# A tuple containing the cover image and cover page html template filenames.
#epub_cover = ()

# HTML files that should be inserted before the pages created by sphinx.
# The format is a list of tuples containing the path and title.
#epub_pre_files = []

# HTML files shat should be inserted after the pages created by sphinx.
# The format is a list of tuples containing the path and title.
#epub_post_files = []

# A list of files that should not be packed into the epub file.
#epub_exclude_files = []

# The depth of the table of contents in toc.ncx.
#epub_tocdepth = 3

# Allow duplicate toc entries.
#epub_tocdup = True
<|endoftext|>


<commit_before>#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# a documentation build configuration file, created by
# sphinx-quickstart on Thu Nov  5 17:47:26 2015.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os
import shlex

sys.path.insert(0, os.path.abspath('../src'))

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinx.ext.todo',
    'sphinx.ext.coverage',
]

# Add any paths that contain templates here, relative to this directory.
# templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
source_suffix = ['.rst']

# The encoding of source files.
source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'parsec'
copyright = '2015, He Tao'
author = 'He Tao'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '2.0.0'
# The full version, including alpha/beta/rc tags.
release = '2.0.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
#keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'sphinxdoc'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
# html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#html_extra_path = []

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
html_domain_indices = True

# If false, no index is generated.
html_use_index = True

# If true, the index is split into individual pages for each letter.
html_split_index = False

# If true, links to the reST sources are added to the pages.
html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr'
#html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# Now only 'ja' uses this config value
#html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'adoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',

# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',

# Additional stuff for the LaTeX preamble.
#'preamble': '',

# Latex figure (float) alignment
#'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
  (master_doc, 'parsec.tex', 'parsec documentation',
   'parsec', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'parsec', 'parsec documentation',
     [author], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
  (master_doc, 'parsec', 'parsec documentation',
   author, 'parsec', 'One line description of project.',
   'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#texinfo_no_detailmenu = False

# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'https://docs.python.org/': None}
<commit_msg>update doc version.<commit_after>#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# a documentation build configuration file, created by
# sphinx-quickstart on Thu Nov  5 17:47:26 2015.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os
import shlex

sys.path.insert(0, os.path.abspath('../src'))

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinx.ext.todo',
    'sphinx.ext.coverage',
]

# Add any paths that contain templates here, relative to this directory.
# templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
source_suffix = ['.rst']

# The encoding of source files.
source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'parsec'
copyright = '2015, He Tao'
author = 'He Tao'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '3.0'
# The full version, including alpha/beta/rc tags.
release = '3.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
#keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'sphinxdoc'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
# html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#html_extra_path = []

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
html_domain_indices = True

# If false, no index is generated.
html_use_index = True

# If true, the index is split into individual pages for each letter.
html_split_index = False

# If true, links to the reST sources are added to the pages.
html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr'
#html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# Now only 'ja' uses this config value
#html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'adoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',

# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',

# Additional stuff for the LaTeX preamble.
#'preamble': '',

# Latex figure (float) alignment
#'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
  (master_doc, 'parsec.tex', 'parsec documentation',
   'parsec', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'parsec', 'parsec documentation',
     [author], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
  (master_doc, 'parsec', 'parsec documentation',
   author, 'parsec', 'One line description of project.',
   'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#texinfo_no_detailmenu = False

# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'https://docs.python.org/': None}
<|endoftext|>


<commit_before># -*- coding: utf-8 -*-
#
# Glue documentation build configuration file, created by
# sphinx-quickstart on Mon Jun 25 12:05:47 2012.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

import os
ON_RTD = os.environ.get('READTHEDOCS') == 'True'

import warnings

# -- General configuration -----------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Import matplotlib now to make sure the warning doesn't cause the Sphinx build
# to fail
with warnings.catch_warnings():
    warnings.simplefilter("ignore")
    import sip
    sip.setapi('QString', 2)
    sip.setapi('QVariant', 2)
    sip.setapi('QDate', 2)
    sip.setapi('QDateTime', 2)
    sip.setapi('QTextStream', 2)
    sip.setapi('QTime', 2)
    sip.setapi('QUrl', 2)
    import PyQt4
    import matplotlib.pyplot as plt

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.todo', 'sphinx.ext.coverage',
              'sphinx.ext.mathjax', 'sphinx.ext.viewcode',
              'sphinx_automodapi.automodapi', 'numpydoc',
              'sphinx.ext.intersphinx']

# Add the redirect.py plugin which is in this directory
import sys
sys.path.insert(0, os.path.abspath('.'))
extensions.append('redirect')

# Workaround for RTD where the default encoding is ASCII
if ON_RTD:
    import locale
    locale.setlocale(locale.LC_ALL, 'C.UTF-8')

intersphinx_cache_limit = 10     # days to keep the cached inventories
intersphinx_mapping = {
    'sphinx': ('http://www.sphinx-doc.org/en/latest/', None),
    'python': ('https://docs.python.org/2.7', None),
    'matplotlib': ('http://matplotlib.org', None),
    'numpy': ('https://docs.scipy.org/doc/numpy', None),
    'astropy': ('http://docs.astropy.org/en/stable/', None),
}

numpydoc_show_class_members = False
autosummary_generate = True
automodapi_toctreedirnm = 'api'

# At the moment, sphinx-automodapi causes a warning to appear about autoattribute being
# registered twice, but this will be fixed in the next release.
suppress_warnings = ['app.add_directive', 'app.add_node']

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'Glue'
copyright = u'2012-2016, Chris Beaumont, Thomas Robitaille, Michelle Borkin'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
from glue import __version__
# The short X.Y version.
version = __version__
# The full version, including alpha/beta/rc tags.
release = __version__

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build', '_templates', '.eggs']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
try:  # use ReadTheDocs theme, if installed
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path(), ]
except ImportError:
    pass

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
html_logo = '_static/logo.png'

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'Gluedoc'

# -- Options for LaTeX output --------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #'preamble': '',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
    ('index', 'Glue.tex', u'Glue Documentation',
     u'Chris Beaumont, Thomas Robitaille, Michelle Borkin', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'glue', u'Glue Documentation',
     [u'Chris Beaumont, Thomas Robitaille, Michelle Borkin'], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False

# -- Options for Texinfo output ------------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    ('index', 'Glue', u'Glue Documentation',
     u'Chris Beaumont, Thomas Robitaille, Michelle Borkin', 'Glue', 'One line description of project.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

todo_include_todos = True
autoclass_content = 'both'

nitpick_ignore = [('py:class', 'object'), ('py:class', 'str'),
                  ('py:class', 'list'), ('py:obj', 'numpy array'),
                  ('py:obj', 'integer'), ('py:obj', 'Callable'),
                  ('py:class', 'PySide.QtGui.QMainWindow'),
                  ('py:class', 'PySide.QtGui.QWidget'),
                  ('py:class', 'PyQt4.QtGui.QTextEdit'),
                  ('py:class', 'PyQt4.QtGui.QTabBar'),
                  ('py:class', 'PyQt4.QtGui.QLabel'),
                  ('py:class', 'PyQt4.QtGui.QComboBox'),
                  ('py:class', 'PyQt4.QtGui.QMessageBox'),
                  ('py:class', 'PyQt4.QtGui.QToolBar'),
                  ('py:class', 'PyQt4.QtCore.QMimeData'),
                  ('py:class', 'PyQt4.QtCore.QAbstractListModel'),
                  ('py:class', 'PyQt4.QtCore.QThread'),
                  ('py:class', 'PyQt5.QtWidgets.QMainWindow'),
                  ('py:class', 'PyQt5.QtWidgets.QWidget'),
                  ('py:class', 'PyQt5.QtWidgets.QTextEdit'),
                  ('py:class', 'PyQt5.QtWidgets.QTabBar'),
                  ('py:class', 'PyQt5.QtWidgets.QLabel'),
                  ('py:class', 'PyQt5.QtWidgets.QComboBox'),
                  ('py:class', 'PyQt5.QtWidgets.QMessageBox'),
                  ('py:class', 'PyQt5.QtWidgets.QToolBar'),
                  ('py:class', 'PyQt5.QtCore.QMimeData'),
                  ('py:class', 'PyQt5.QtCore.QAbstractListModel'),
                  ('py:class', 'PyQt5.QtCore.QThread'),
                  ('py:obj', "str ('file' | 'directory' | 'label')"),
                  ('py:obj', 'function(application)'),
                  ('py:class', 'builtins.object'),
                  ('py:class', 'builtins.list'),
                  ('py:class', 'builtins.type'),
                  ('py:class', 'glue.viewers.histogram.layer_artist.HistogramLayerBase'),
                  ('py:class', 'glue.viewers.scatter.layer_artist.ScatterLayerBase'),
                  ('py:class', 'glue.viewers.image.layer_artist.ImageLayerBase'),
                  ('py:class', 'glue.viewers.image.layer_artist.RGBImageLayerBase'),
                  ('py:class', 'glue.viewers.image.qt.ImageWidgetBase'),
                  ('py:class', 'PyQt4.QtGui.QMainWindow'),
                  ('py:class', 'PyQt4.QtGui.QWidget'),
                  # TODO: the next ones should be fixable
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.data'),
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.attribute'),
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.rgb_mode'),
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.slice'),
                  ('py:mod', 'glue.core'),
                  ('py:mod', 'glue.viewers'),
                  ('py:mod', 'glue.viewers.scatter'),
                  ('py:mod', 'glue.viewers.common'),
                  ('py:mod', 'glue.viewers.common.qt.mouse_mode'),
                  ('py:mod', 'glue.dialogs.custom_component')
              ]

# coax Sphinx into treating descriptors as attributes
# see https://bitbucket.org/birkenfeld/sphinx/issue/1254/#comment-7587063
from glue.utils.qt.widget_properties import WidgetProperty
WidgetProperty.__get__ = lambda self, *args, **kwargs: self

viewcode_import = False
<commit_msg>Fix Sphinx warnings<commit_after># -*- coding: utf-8 -*-
#
# Glue documentation build configuration file, created by
# sphinx-quickstart on Mon Jun 25 12:05:47 2012.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

import os
ON_RTD = os.environ.get('READTHEDOCS') == 'True'

import warnings

# -- General configuration -----------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Import matplotlib now to make sure the warning doesn't cause the Sphinx build
# to fail
with warnings.catch_warnings():
    warnings.simplefilter("ignore")
    import sip
    sip.setapi('QString', 2)
    sip.setapi('QVariant', 2)
    sip.setapi('QDate', 2)
    sip.setapi('QDateTime', 2)
    sip.setapi('QTextStream', 2)
    sip.setapi('QTime', 2)
    sip.setapi('QUrl', 2)
    import PyQt4
    import matplotlib.pyplot as plt

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.todo', 'sphinx.ext.coverage',
              'sphinx.ext.mathjax', 'sphinx.ext.viewcode',
              'sphinx_automodapi.automodapi', 'numpydoc',
              'sphinx.ext.intersphinx']

# Add the redirect.py plugin which is in this directory
import sys
sys.path.insert(0, os.path.abspath('.'))
extensions.append('redirect')

# Workaround for RTD where the default encoding is ASCII
if ON_RTD:
    import locale
    locale.setlocale(locale.LC_ALL, 'C.UTF-8')

intersphinx_cache_limit = 10     # days to keep the cached inventories
intersphinx_mapping = {
    'sphinx': ('http://www.sphinx-doc.org/en/latest/', None),
    'python': ('https://docs.python.org/2.7', None),
    'matplotlib': ('http://matplotlib.org', None),
    'numpy': ('https://docs.scipy.org/doc/numpy', None),
    'astropy': ('http://docs.astropy.org/en/stable/', None),
}

numpydoc_show_class_members = False
autosummary_generate = True
automodapi_toctreedirnm = 'api'

# At the moment, sphinx-automodapi causes a warning to appear about autoattribute being
# registered twice, but this will be fixed in the next release.
suppress_warnings = ['app.add_directive', 'app.add_node']

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'Glue'
copyright = u'2012-2016, Chris Beaumont, Thomas Robitaille, Michelle Borkin'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
from glue import __version__
# The short X.Y version.
version = __version__
# The full version, including alpha/beta/rc tags.
release = __version__

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build', '_templates', '.eggs']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
try:  # use ReadTheDocs theme, if installed
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path(), ]
except ImportError:
    pass

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
html_logo = '_static/logo.png'

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'Gluedoc'

# -- Options for LaTeX output --------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #'preamble': '',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
    ('index', 'Glue.tex', u'Glue Documentation',
     u'Chris Beaumont, Thomas Robitaille, Michelle Borkin', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'glue', u'Glue Documentation',
     [u'Chris Beaumont, Thomas Robitaille, Michelle Borkin'], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False

# -- Options for Texinfo output ------------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    ('index', 'Glue', u'Glue Documentation',
     u'Chris Beaumont, Thomas Robitaille, Michelle Borkin', 'Glue', 'One line description of project.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

todo_include_todos = True
autoclass_content = 'both'

nitpick_ignore = [('py:class', 'object'), ('py:class', 'str'),
                  ('py:class', 'list'), ('py:obj', 'numpy array'),
                  ('py:obj', 'integer'), ('py:obj', 'Callable'),
                  ('py:class', 'PySide.QtGui.QMainWindow'),
                  ('py:class', 'PySide.QtGui.QWidget'),
                  ('py:class', 'PyQt4.QtGui.QTextEdit'),
                  ('py:class', 'PyQt4.QtGui.QTabBar'),
                  ('py:class', 'PyQt4.QtGui.QLabel'),
                  ('py:class', 'PyQt4.QtGui.QComboBox'),
                  ('py:class', 'PyQt4.QtGui.QMessageBox'),
                  ('py:class', 'PyQt4.QtGui.QToolBar'),
                  ('py:class', 'PyQt4.QtCore.QMimeData'),
                  ('py:class', 'PyQt4.QtCore.QAbstractListModel'),
                  ('py:class', 'PyQt4.QtCore.QThread'),
                  ('py:class', 'PyQt4.QtGui.QStyledItemDelegate'),
                  ('py:class', 'PyQt5.QtWidgets.QMainWindow'),
                  ('py:class', 'PyQt5.QtWidgets.QWidget'),
                  ('py:class', 'PyQt5.QtWidgets.QTextEdit'),
                  ('py:class', 'PyQt5.QtWidgets.QTabBar'),
                  ('py:class', 'PyQt5.QtWidgets.QLabel'),
                  ('py:class', 'PyQt5.QtWidgets.QComboBox'),
                  ('py:class', 'PyQt5.QtWidgets.QMessageBox'),
                  ('py:class', 'PyQt5.QtWidgets.QToolBar'),
                  ('py:class', 'PyQt5.QtWidgets.QStyledItemDelegate'),
                  ('py:class', 'PyQt5.QtCore.QMimeData'),
                  ('py:class', 'PyQt5.QtCore.QAbstractListModel'),
                  ('py:class', 'PyQt5.QtCore.QThread'),
                  ('py:obj', "str ('file' | 'directory' | 'label')"),
                  ('py:obj', 'function(application)'),
                  ('py:class', 'builtins.object'),
                  ('py:class', 'builtins.list'),
                  ('py:class', 'builtins.type'),
                  ('py:class', 'glue.viewers.histogram.layer_artist.HistogramLayerBase'),
                  ('py:class', 'glue.viewers.scatter.layer_artist.ScatterLayerBase'),
                  ('py:class', 'glue.viewers.image.layer_artist.ImageLayerBase'),
                  ('py:class', 'glue.viewers.image.layer_artist.RGBImageLayerBase'),
                  ('py:class', 'glue.viewers.image.qt.ImageWidgetBase'),
                  ('py:class', 'PyQt4.QtGui.QMainWindow'),
                  ('py:class', 'PyQt4.QtGui.QWidget'),
                  # TODO: the next ones should be fixable
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.data'),
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.attribute'),
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.rgb_mode'),
                  ('py:obj', 'glue.viewers.image.qt.viewer_widget.ImageWidget.slice'),
                  ('py:mod', 'glue.core'),
                  ('py:mod', 'glue.viewers'),
                  ('py:mod', 'glue.viewers.scatter'),
                  ('py:mod', 'glue.viewers.common'),
                  ('py:mod', 'glue.viewers.common.qt.mouse_mode'),
                  ('py:mod', 'glue.dialogs.custom_component')
              ]

# coax Sphinx into treating descriptors as attributes
# see https://bitbucket.org/birkenfeld/sphinx/issue/1254/#comment-7587063
from glue.utils.qt.widget_properties import WidgetProperty
WidgetProperty.__get__ = lambda self, *args, **kwargs: self

viewcode_import = False
<|endoftext|>


<commit_before>#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# morphforge documentation build configuration file, created by
# sphinx-quickstart on Fri Mar 23 14:01:08 2012.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration -----------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

sys.path.append('../src/')

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.autosummary',
    'sphinx.ext.doctest',
    'sphinx.ext.todo',
    'sphinx.ext.pngmath',
    'sphinx.ext.ifconfig',
    'sphinx.ext.viewcode',
    'sphinx.ext.inheritance_diagram',
    ]

inheritance_graph_attrs = dict(rankdir="LR", size='"9.0, 8.0"',
                               fontsize=10, ratio='compress')

autodoc_default_flags =['undoc-members', 'members']

add_module_names = False
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'morphforge'
copyright = u'2012, Mike Hull'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '0.1-alpha'
# The full version, including alpha/beta/rc tags.
release = '0.1-alpha'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'default'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# .
html_title = "morphforge"
html_add_permalinks = False
# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
html_use_opensearch = False

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'morphforgedoc'

# -- Options for LaTeX output --------------------------------------------------

# The paper size ('letter' or 'a4').
#latex_paper_size = 'letter'

# The font size ('10pt', '11pt' or '12pt').
#latex_font_size = '10pt'

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
  ('index', 'morphforge.tex', u'morphforge Documentation',
   u'Mike Hull', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Additional stuff for the LaTeX preamble.
#latex_preamble = ''

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'morphforge', u'morphforge Documentation',
     [u'Mike Hull'], 1)
]

html_theme = "haiku"

todo_include_todos=True

autosummary_generate = True

# AutoDoc:
def maybe_skip_member(app, what, name, obj, skip, options):

    # Since we add 'toSWC', etc to MorphologyTree, we
    # don't want this to show up in the documentation.
    if 'members' in options:
        if name.startswith('to') or name.startswith('from'):
            return True
    if name == "__weakref__":
        return True

    #print name
    if name in ['__weakref__' ,'__dict__','__doc__','__module__']:
        return True
    return False

def setup(app):
    app.connect('autodoc-skip-member', maybe_skip_member)

templates_path = ["_templates",]

<commit_msg>Building on RTD<commit_after>#!/usr/bin/python
# -*- coding: utf-8 -*-
#
# morphforge documentation build configuration file, created by
# sphinx-quickstart on Fri Mar 23 14:01:08 2012.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration -----------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# To allow stuff to build on RTD
import sys

class Mock(object):
    def __init__(self, *args, **kwargs):
        pass

    def __call__(self, *args, **kwargs):
        return Mock()

    @classmethod
    def __getattr__(cls, name):
        if name in ('__file__', '__path__'):
            return '/dev/null'
        elif name[0] == name[0].upper():
            mockType = type(name, (), {})
            mockType.__module__ = __name__
            return mockType
        else:
            return Mock()

MOCK_MODULES = ['numpy', 'pylab', 'scipy', 'mredoc', 'mreorg']
for mod_name in MOCK_MODULES:
    sys.modules[mod_name] = Mock

sys.path.append('../src/')

# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.autosummary',
    'sphinx.ext.doctest',
    'sphinx.ext.todo',
    'sphinx.ext.pngmath',
    'sphinx.ext.ifconfig',
    'sphinx.ext.viewcode',
    'sphinx.ext.inheritance_diagram',
    ]

inheritance_graph_attrs = dict(rankdir="LR", size='"9.0, 8.0"',
                               fontsize=10, ratio='compress')

autodoc_default_flags =['undoc-members', 'members']

add_module_names = False
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'morphforge'
copyright = u'2012, Mike Hull'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '0.1-alpha'
# The full version, including alpha/beta/rc tags.
release = '0.1-alpha'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build']

# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# -- Options for HTML output ---------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'default'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# .
html_title = "morphforge"
html_add_permalinks = False
# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
html_use_opensearch = False

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'morphforgedoc'

# -- Options for LaTeX output --------------------------------------------------

# The paper size ('letter' or 'a4').
#latex_paper_size = 'letter'

# The font size ('10pt', '11pt' or '12pt').
#latex_font_size = '10pt'

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
  ('index', 'morphforge.tex', u'morphforge Documentation',
   u'Mike Hull', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Additional stuff for the LaTeX preamble.
#latex_preamble = ''

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True

# -- Options for manual page output --------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'morphforge', u'morphforge Documentation',
     [u'Mike Hull'], 1)
]

html_theme = "haiku"

todo_include_todos=True

autosummary_generate = True

# AutoDoc:
def maybe_skip_member(app, what, name, obj, skip, options):

    # Since we add 'toSWC', etc to MorphologyTree, we
    # don't want this to show up in the documentation.
    if 'members' in options:
        if name.startswith('to') or name.startswith('from'):
            return True
    if name == "__weakref__":
        return True

    #print name
    if name in ['__weakref__' ,'__dict__','__doc__','__module__']:
        return True
    return False

def setup(app):
    app.connect('autodoc-skip-member', maybe_skip_member)

templates_path = ["_templates",]

<|endoftext|>